PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00020780_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 82aa MW: 9390.36 Da PI: 4.782

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00020780_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.5e-07	55	77	7	29
HHHHHHHHHHHHHHHHHHCTSCC CS HLH 7 erErrRRdriNsafeeLrellPk 29 Er+RR+++N++++ Lr ++P+ FANhyb_icon00020780_a.1.g00001.1 55 VSERNRRKKLNERLFALRAVVPN 77 67********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.16E-7	39	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.934	48	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-5	51	80	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-6	55	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-5	55	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MDNIGDEYQH YWETNRFLQT EELDSWGLGE EAFSGYYDSS SPDGAASSMA SKNIVSERNR 60 RKKLNERLFA LRAVVPNISK VI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296498.1	6e-52	PREDICTED: transcription factor bHLH35
Swissprot	Q2HIV9	5e-30	BH035_ARATH; Transcription factor bHLH35
Swissprot	Q700E3	8e-30	BH027_ARATH; Transcription factor bHLH27
TrEMBL	A0A2P6QSI0	1e-47	A0A2P6QSI0_ROSCH; Putative transcription factor bHLH family
STRING	XP_004296498.1	2e-51	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3389	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-33	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]