PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00021958_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 108aa    MW: 12675.3 Da    PI: 7.6104
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00021958_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.6e-202073356
                                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                      k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  FANhyb_icon00021958_a.1.g00001.1 20 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 73
                                      56689************************************************9 PP
2HD-ZIP_I/II1331.1e-4219107189
                       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen 77 
                                       ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + 
  FANhyb_icon00021958_a.1.g00001.1  19 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKISF 95 
                                       69*************************************************************************** PP

                       HD-ZIP_I/II  78 erLekeveeLre 89 
                                       ++L++++++L++
  FANhyb_icon00021958_a.1.g00001.1  96 DSLQHDNQALHK 107
                                       **********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-201477IPR009057Homeodomain-like
PROSITE profilePS5007117.4751575IPR001356Homeobox domain
SMARTSM003891.0E-171879IPR001356Homeobox domain
PfamPF000464.3E-172073IPR001356Homeobox domain
CDDcd000861.59E-152076No hitNo description
Gene3DG3DSA:1.10.10.604.1E-212282IPR009057Homeodomain-like
PRINTSPR000311.9E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000311.9E-65571IPR000047Helix-turn-helix motif
PfamPF021832.3E-1675108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MLDGLDEEGC VEESGHVAEK KRRLSVEQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ  60
VAVWFQNRRA RWKTKQLERD YGVLKANYDS LKISFDSLQH DNQALHKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00587DAPTransfer from AT5G65310Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288161.17e-73PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
RefseqXP_011465283.18e-73PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
SwissprotP466671e-50ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A2P6RQ982e-70A0A2P6RQ98_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004288161.13e-72(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.25e-53homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]