PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00022232_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 167aa    MW: 18816.6 Da    PI: 10.2398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00022232_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-18113159148
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                       +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  FANhyb_icon00022232_a.1.g00001.1 113 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 159
                                       799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.182108163IPR017930Myb domain
SuperFamilySSF466894.14E-19108164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-24112162IPR009057Homeodomain-like
SMARTSM007173.1E-17112161IPR001005SANT/Myb domain
PfamPF002498.0E-17113159IPR001005SANT/Myb domain
CDDcd001671.62E-16116159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
QLFRPGPPLT AIDRFLWSQN NAKNKERLIS SSNGCSSFGG AMADLQPCSN WPPSSLGEAS  60
LDEMLFIDHG DAMTWPPEKI QNPNMVFKED QMKVGSKGVG KRAKKGSSVP LIKGQWTDEE  120
DRKLIRLVKQ YGVRKWAQIA EKLVGRAGKQ CRERWHNHLR PDIKVCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-20111167561B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460934.11e-118PREDICTED: myb-like protein Q
TrEMBLA0A2P6PAJ51e-104A0A2P6PAJ5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004295744.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-32myb domain protein 119