PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00023757_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 164aa    MW: 18989.5 Da    PI: 9.7672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00023757_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1040145397
                                       EE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-T CS
                                B3   3 kvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg...rsWevkliyrkksgryvltk 63 
                                       k+lt sd ++++rl +    ++++             ++k   +k++t++d++     + ++++   k+s++yv+ +
  FANhyb_icon00023757_a.1.g00001.1  40 KKLTMSDLGNLSRLLVLGYMVKNFvlplvdadfkqrvESK--AGKQVTVKDSDKeteHQLTFRY--FKSSKSYVFNG 112
                                       6777777777777765555554446666777667754433..5678999996666456666666..*********** PP

                                       THHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                                B3  64 GWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                                        WkeFvk  +Lk  D + ++ d + s+f  +++v+
  FANhyb_icon00023757_a.1.g00001.1 113 KWKEFVKRRDLKKDDEIGLHWDTHdSKF--HFSVL 145
                                       ********************77433555..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1438149IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-1238146No hitNo description
Gene3DG3DSA:2.40.330.108.7E-1739159IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-740144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
QKLVVSVQEN IESNSKSDDG ENLHDPEQVA RDLTLYKIKK KLTMSDLGNL SRLLVLGYMV  60
KNFVLPLVDA DFKQRVESKA GKQVTVKDSD KETEHQLTFR YFKSSKSYVF NGKWKEFVKR  120
RDLKKDDEIG LHWDTHDSKF HFSVLKVASQ ERQAATEVAR ANQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470509.11e-113PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A2P6SGG36e-70A0A2P6SGG3_ROSCH; Putative transcription factor B3-Domain family
STRINGevm.model.supercontig_85.91e-33(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-17B3 family protein