PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00024257_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 93aa MW: 10006.4 Da PI: 8.0258

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00024257_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.4	2.3e-13	25	50	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ FANhyb_icon00024257_a.1.g00001.1 25 PGEADCPFYLKTGSCKYGATCRYNHP 50 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.432	24	52	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.4E-7	24	51	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-11	26	50	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	28	51	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	30	49	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
EVAVKPLVSF TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGATCRYNHP DRYDINPPVA 60 AISYPLPAPS VAGFNLGVAN PSAFTYQTLG QPT

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269\|PubMed:11595801, ECO:0000269\|PubMed:12530963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295542.1	2e-57	PREDICTED: zinc finger CCCH domain-containing protein 37
Swissprot	Q941Q3	1e-30	C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A2P6Q7Y6	1e-54	A0A2P6Q7Y6_ROSCH; Putative transcription factor C3H family
STRING	XP_004295542.1	8e-57	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7558	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	5e-33	floral homeotic protein (HUA1)