PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00025050_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 199aa    MW: 22781 Da    PI: 9.4004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00025050_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.63e-16201556128
                               NAM   6 rFhPtdeelvveyLkkkvegkk..leleevikevd...iykvePwdLpkkvka....eekewyfFskrdkkya..tg 71 
                                        F+Ptd +lv +yL  k++      + +++++e+d   i+ +ePw +  +++a    +++  yfF++ ++ +a  +g
  FANhyb_icon00025050_a.1.g00001.1  20 TFKPTDAQLVGHYLYGKIRMMGqvGNGKQAFPELDvygITGMEPWLIWDCLEAirfpHQDFSYFFTRVKRLSAkgKG 96 
                                       5****************9877755333445666652226678***99753333333344456***998887763357 PP

                               NAM  72 krknr.atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       kr +r + + g W++  ++kev++   +e  g  + L + + +++  ++  W+++e+++
  FANhyb_icon00025050_a.1.g00001.1  97 KRCSRtVGSGGKWSENESSKEVYVDgFQEPFGRTRKLRYESSDKEFEHHGAWMIEEFSI 155
                                       899994445789***********9855677**********9999999**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-189172IPR003441NAC domain
PROSITE profilePS5100519.93915173IPR003441NAC domain
PfamPF023653.1E-1120155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
GSGSRELMRL EELPCGVVRT FKPTDAQLVG HYLYGKIRMM GQVGNGKQAF PELDVYGITG  60
MEPWLIWDCL EAIRFPHQDF SYFFTRVKRL SAKGKGKRCS RTVGSGGKWS ENESSKEVYV  120
DGFQEPFGRT RKLRYESSDK EFEHHGAWMI EEFSIEHPGV VSSDLVLCRM KRNGKSNNKK  180
RKAVEDEEVN AKRAKCFQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465731.11e-146PREDICTED: uncharacterized protein LOC105351863
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2205423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.18e-06NAC domain containing protein 1