PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00025183_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 195aa MW: 20378.6 Da PI: 8.4788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00025183_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk++++ L H++++ FANhyb_icon00025183_a.1.g00001.1 103 YVCGYCGKPCKSGQALGGHMSRC 125 9*******************998 PP
2	zf-C2H2	19.6	2.4e-06	158	179	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C+dC++ F +++ L++H+++ FANhyb_icon00025183_a.1.g00001.1 158 YVCKDCDMKFDTSHGLNSHMSM 179 9*******************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.787	158	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
NVGSSSSSSV EIRGFGSGAN IGVQSCLSRQ VDTYLFGQKI GEPGSGANNG AKSCLSREAD 60 HYLFGQKIGE PWSDIFGARS DAGVKIVESG SGATRNNLGA TGYVCGYCGK PCKSGQALGG 120 HMSRCKKIHE AQGGEAKEAG SSGSGPKRYE YNPARGGYVC KDCDMKFDTS HGLNSHMSMR 180 SCKKGEEATL DTRVV