PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00025965_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 175aa    MW: 20046.9 Da    PI: 4.5949
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00025965_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.26.5e-1140110274
                          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                                       Wt+   l L++ +  +e + r++ +  ++W+ +++++ + g+ rs  q + kwe l  +yk i +++++    
  FANhyb_icon00025965_a.1.g00001.1  40 WTETDSLILVNEVAAVEADCRKEFSSFQKWKVIAQNCTSLGVPRSLDQYRRKWEALLHQYKIIDHWNSQS--A 110
                                       9999999************************************************************984..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-739111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LQNRSKQNPE MKGEQTLSEL HHSNRGSGTR RTRSQVAPDW TETDSLILVN EVAAVEADCR  60
KEFSSFQKWK VIAQNCTSLG VPRSLDQYRR KWEALLHQYK IIDHWNSQSA ASYWAMESDR  120
RKQFGLPRSF DPEVFKAIGG YEKVQENQSD TEVDSEPEAE ADVADDDEDE GVVEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292870.21e-113PREDICTED: LOW QUALITY PROTEIN: ABC transporter F family member 4
TrEMBLA0A2P6PZU63e-90A0A2P6PZU6_ROSCH; Uncharacterized protein
STRINGXP_004292870.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-37sequence-specific DNA binding transcription factors