PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00027555_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 126aa MW: 14572.7 Da PI: 9.3197

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00027555_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.8e-36	26	125	1	100
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrF+Ptd elv++yLk+k+ gkkl++ +v++evdiyk+ PwdLp k + ++++ +wyfF++r+kkya+g r n FANhyb_icon00027555_a.1.g00001.1 26 LPPGFRFNPTDVELVQYYLKRKIMGKKLHV-KVVAEVDIYKWAPWDLPdKsCWRSGDLKWYFFCPREKKYASGGRVN 101 79**************************.99**********96446777888*************** PP NAM 76 ratksgyWkatgkdkevlskkgelv 100 rat+ gyWk+tgkd++vl ++e+v FANhyb_icon00027555_a.1.g00001.1 102 RATDCGYWKTTGKDRSVLY-NSEVV 125 ***************98.66555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-40	18	126	IPR003441	NAC domain
PROSITE profile	PS51005	38.285	26	126	IPR003441	NAC domain
Pfam	PF02365	5.0E-18	27	116	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
NLDIGEDHSY ILGTFHLDSV MGKSSLPPGF RFNPTDVELV QYYLKRKIMG KKLHVKVVAE 60 VDIYKWAPWD LPDKSCWRSG DLKWYFFCPR EKKYASGGRV NRATDCGYWK TTGKDRSVLY 120 NSEVVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-34	12	126	1	113	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290501.1	8e-73	PREDICTED: NAC domain-containing protein 78-like
Refseq	XP_011458487.1	8e-73	PREDICTED: NAC domain-containing protein 78-like
Swissprot	Q9FY82	8e-55	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A2P6PRT7	3e-66	A0A2P6PRT7_ROSCH; Putative transcription factor NAM family
STRING	XP_004290501.1	3e-72	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	3e-57	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]