PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00027654_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 151aa    MW: 17399.8 Da    PI: 7.0062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00027654_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.47.9e-11690893
                                      -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH.HT--TT-EEEEEE CS
                                B3  8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka.ngLkegDfvvFkl 84
                                      s++l++ + ++pk+f+ +h  g+  +   l+le ++grsW+  +  + ++++++++kGW +F  +  ++ +   ++F++
  FANhyb_icon00027654_a.1.g00001.1  6 SHMLSNIWQRIPKSFVHAHlHGDRSRCAWLSLEGLEGRSWKCDV--KYNGDHCLISKGWVQFFTDiSDIHAALYFIFQY 82
                                      789999999***********66666778****************..888889**********99845788999999998 PP

                                      -SS.SEE..E CS
                                B3 85 dgr.sefelv 93
                                       g+ ++f  +
  FANhyb_icon00027654_a.1.g00001.1 83 GGHeMQF--T 90
                                      8766666..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.2E-9490IPR003340B3 DNA binding domain
CDDcd100171.98E-8692No hitNo description
SuperFamilySSF1019365.1E-9883IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-91394IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
IYMYISHMLS NIWQRIPKSF VHAHLHGDRS RCAWLSLEGL EGRSWKCDVK YNGDHCLISK  60
GWVQFFTDIS DIHAALYFIF QYGGHEMQFT VTRFADGLKE NGVLGTYNLK LETHPTVNWE  120
VTVEVHANSL LRVTNGWKAF AMETEINAST C