PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00030860_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 85aa    MW: 9631.91 Da    PI: 8.9727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00030860_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.87.4e-084685139
                              FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskeg 39
                                      +fY +YAk +GF vr+++++ s  + g+it+ ++vCs +g
  FANhyb_icon00030860_a.1.g00001.1 46 SFYYAYAKVMGFGVRQNYKRLStITPGKITSLRLVCSAQG 85
                                      5****************99998557799*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-54685IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MDGPREPSAF KQSDGNEMEY KGVQYDKLST EDIKGQKFKT MEEAESFYYA YAKVMGFGVR  60
QNYKRLSTIT PGKITSLRLV CSAQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470682.15e-53PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_011470762.11e-54PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like, partial
STRINGXP_004309150.12e-52(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-07FAR1-related sequence 7