PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00031140_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 117aa MW: 13432.9 Da PI: 4.1957

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00031140_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.2e-08	80	117	1	38
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 +fY Y+ GFs+rk+k ks+ ++++++r++vCs++ FANhyb_icon00031140_a.1.g00001.1 80 RFYLLYSVAKGFSIRKHKLDKSRGSHQVIRRELVCSRQ 117 59**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-6	80	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MEESGMGSDM NDLDETTNLL QIESEHEDED SNMVSVDEEE ESESPEGDEL VTDFNGKLYK 60 DLLVCDLANV MFESVVHLNR FYLLYSVAKG FSIRKHKLDK SRGSHQVIRR ELVCSRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294380.2	3e-17	PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
Refseq	XP_011461031.1	3e-17	PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
Refseq	XP_011461032.1	3e-17	PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A2P6PQ41	5e-14	A0A2P6PQ41_ROSCH; Putative transcription factor FAR family
STRING	XP_004307053.1	1e-18	(Fragaria vesca)