PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00033462_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 126aa MW: 13723.1 Da PI: 8.2324

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00033462_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57	3.9e-18	1	37	23	59
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 sYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ FANhyb_icon00033462_a.1.g00001.1 1 SYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 37 8***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-16	1	39	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-14	1	39	IPR003657	WRKY domain
SMART	SM00774	2.0E-10	1	38	IPR003657	WRKY domain
PROSITE profile	PS50811	19.164	1	39	IPR003657	WRKY domain
Pfam	PF03106	1.5E-13	1	37	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
SYYRCTTAGC GVKKRVERSS DDPSIVVTTY EGQHTHPSPI TPRGSMGMAP LPSELSSHVF 60 SGAGYGVVPH HYQQQQQQQQ QHLHSYIYNS SPSLNITTTT SSAPSYGFNP ASFPGLFQER 120 YGNIGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295061.1	2e-87	PREDICTED: probable WRKY transcription factor 48
TrEMBL	A0A1S5SLA3	5e-86	A0A1S5SLA3_FRAVE; WRKY transcription factor 22
STRING	XP_004295061.1	9e-87	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-25	WRKY DNA-binding protein 48