PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00034214_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 79aa    MW: 8872.06 Da    PI: 4.8293
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00034214_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind37.18.4e-123779244
                                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHH CS
                      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpky 44
                                      F++k+y++++d+++++li w + +nsf+v+++ ef++++Lp y
  FANhyb_icon00034214_a.1.g00001.1 37 FVMKTYQMVNDPTTDRLIAWGRANNSFIVVEPLEFSQRLLPAY 79
                                      9********************999****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-123479IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-103478IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-83779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MITNTSQNQR ASSSSEAKPQ QSLMMSMEDS GNVIAPFVMK TYQMVNDPTT DRLIAWGRAN  60
NSFIVVEPLE FSQRLLPAY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287427.13e-49PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-20HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1B0V8F07e-48A0A1B0V8F0_FRAVE; Heat shock factor C1a
STRINGXP_004287427.11e-48(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-23heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]