PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00034443_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 91aa    MW: 9928.48 Da    PI: 10.9436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00034443_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-051234123
                                      EEETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                      ++Cp+Cg+ F     L  H+r+H
  FANhyb_icon00034443_a.1.g00001.1 12 HECPICGMKFAVGQALGGHMRRH 34
                                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-6936No hitNo description
Gene3DG3DSA:3.30.160.602.5E-41035IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-91236IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1821234IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
AQPSSPARPK KHECPICGMK FAVGQALGGH MRRHRDVMSS ATERIRAAAV PVLKKSNSSK  60
RVSSLNLDLN LAPPGYQHHY DLTKLQLISG N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024159540.14e-52zinc finger protein ZAT12-like
SwissprotQ424533e-14ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLA0A2P6QIA91e-50A0A2P6QIA9_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294605.15e-45(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.11e-16C2H2 family protein