PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00035526_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 156aa MW: 17730.7 Da PI: 6.1077

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00035526_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58.9	1.1e-18	14	155	199	341
GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl 271 ++a++ n++++ +++++s sl + ++L + +lsPk++v+v++e +++ s F+e +eal++y al +sl FANhyb_icon00035526_a.1.g00001.1 14 DDAVIANCMIHQLHMPNRSISLVK---TFLGGMSKLSPKLIVLVQEElfnfSKMPSMFFVEFYTEALHHYNALCNSL 87 689999********99999999...****************7554455677999999********** PP GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklll 341 ++++ e + +E+e+lg +i + v + e++er+ W++ + + GFk++pls+++++qak+l+ FANhyb_icon00035526_a.1.g00001.1 88 VSSFSGEYkMGLRQIEKEVLGVKILESVRQFPCEKEERML----WEDCIASlKGFKSIPLSSSNVSQAKYLV 155 66665555267789***************9777766....98868***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.593	1	156	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-16	14	155	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
VATEEDFPKI EVIDDAVIAN CMIHQLHMPN RSISLVKTFL GGMSKLSPKL IVLVQEELFN 60 FSKMPSMFFV EFYTEALHHY NALCNSLVSS FSGEYKMGLR QIEKEVLGVK ILESVRQFPC 120 EKEERMLWED CIASLKGFKS IPLSSSNVSQ AKYLVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002276350.1	3e-67	PREDICTED: nodulation-signaling pathway 2 protein
TrEMBL	A0A2P6RRU5	1e-83	A0A2P6RRU5_ROSCH; Putative transcription factor GRAS family
STRING	XP_004308265.1	1e-102	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13148	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	3e-10	GRAS family protein