PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00037214_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 86aa MW: 9564.85 Da PI: 9.4998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00037214_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H FANhyb_icon00037214_a.1.g00001.1 43 FVCKTCNREFSSFQALGGHRASH 65 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.53E-6	38	70	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.3E-4	38	67	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	7.6E-12	42	67	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.138	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MKRDREFEDE QTLDLVSCLM QLSKAGQNDS FPVKKQKTSD RAFVCKTCNR EFSSFQALGG 60 HRASHNKPKL MAGGATNLLQ LSQSTA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294604.1	1e-55	PREDICTED: zinc finger protein ZAT12-like
Swissprot	Q9SLD4	3e-14	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A2P6QIB1	2e-46	A0A2P6QIB1_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004294604.1	5e-55	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	7e-18	C2H2 family protein