PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00040793_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YB

Protein Properties

Length: 135aa MW: 14998.6 Da PI: 4.398

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00040793_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	80.7	1.9e-25	1	48	50	97
NF-YB 50 asdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 asdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re+egek FANhyb_icon00040793_a.1.g00001.1 1 ASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 48 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-24	1	78	IPR009072	Histone-fold
SuperFamily	SSF47113	1.13E-17	1	59	IPR009072	Histone-fold
PRINTS	PR00615	2.5E-11	5	23	No hit	No description
PRINTS	PR00615	2.5E-11	24	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKVYLQR FREMEGEKSS MAARDKDSSG 60 GVVGFEGGGE EQEQEEGESI GSSSRSRDTC TAAGGFIRWV LVGLGLERVG LGPTWVDPDD 120 EKKQNRLYEL LSLNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	3e-18	1	43	51	93	NF-YB
4awl_B	3e-18	1	43	52	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-18	1	43	52	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	9e-31	nuclear factor Y, subunit B3