PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00040879_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 121aa MW: 13723.6 Da PI: 4.4692

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00040879_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.6	3.8e-09	1	36	15	50
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR+ ++ K A+EL +LC a+v+ ++ +tg + ++ FANhyb_icon00040879_a.1.g00001.1 1 KRKSTLKKSASELEILCRAQVCCVMEEPTGDVVVWP 36 9*****************************999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	2.1E-9	1	35	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	8.9	1	32	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.23E-11	1	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
KRKSTLKKSA SELEILCRAQ VCCVMEEPTG DVVVWPENHA DAVSIITKYK QSKKKAKLNR 60 STTNLEQLEE ENKDLAMGDE AIDQSLNALE NLEGFDFDQF LNNTVLFEDE TRVLIILISF 120 S

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15475	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	1e-09	AGAMOUS-like 51