PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00044463_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 89aa MW: 10197.3 Da PI: 6.5313

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00044463_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.8	2.1e-14	34	89	2	52
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrR 52 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR FANhyb_icon00044463_a.1.g00001.1 34 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRR 89 89***************99********************************9 PP
2	Wus_type_Homeobox	94.8	7.3e-31	33	89	2	58
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrk 58 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr+ FANhyb_icon00044463_a.1.g00001.1 33 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRR 89 589****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-7	11	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-11	28	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.863	30	89	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-12	34	89	IPR001356	Homeobox domain
CDD	cd00086	1.95E-4	34	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MEDHQGQAGG DQEAKEPNSP NSHSSSERST EPVRSRWIPK PEQILILESI FNSGMVNPPK 60 EETVRIRKLL EKFGSVGDAN VFYWFQNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289578.2	3e-52	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	2e-36	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2P6RHC6	5e-48	A0A2P6RHC6_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004289578.1	1e-51	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-34	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]