PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00045718_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 120aa MW: 13124.8 Da PI: 11.2265

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00045718_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	72.3	1.5e-22	76	120	2	46
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++ FANhyb_icon00045718_a.1.g00001.1 76 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQ 120 78*****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	19.894	82	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.4E-18	82	119	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
LYPPQPTLPF SLPTGLAART AAPYRSVSMS NSEAPNNEQL SNGAAAAAMM MERQQQQQQT 60 QQQQTAQQPS SNGVLAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301414.1	4e-59	PREDICTED: transcription factor TCP7-like
TrEMBL	D9ZJD5	9e-39	D9ZJD5_MALDO; TCP domain class transcription factor
STRING	XP_004301414.1	1e-58	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-27	TCP family protein