PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00046819_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 54aa MW: 6037.97 Da PI: 10.2294

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00046819_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.8e-14	17	54	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g+WT+eEd++l ++++++G g+W++ ++ g++R++k FANhyb_icon00046819_a.1.g00001.1 17 KGPWTPEEDQKLMNYIQKHGHGSWRALPKLAGLNRCGK 54 79**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-17	8	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.59E-12	12	53	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.447	12	54	IPR017930	Myb domain
Pfam	PF00249	2.3E-12	17	54	IPR001005	SANT/Myb domain
CDD	cd00167	6.91E-7	19	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
RGKMGRSPCC DDSGLKKGPW TPEEDQKLMN YIQKHGHGSW RALPKLAGLN RCGK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288189.1	2e-32	PREDICTED: transcription factor MYB28-like
Refseq	XP_024183334.1	2e-32	transcription factor MYB92-like
Swissprot	Q9SBF3	3e-28	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A2P6RQD4	6e-31	A0A2P6RQD4_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004288189.1	8e-32	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-30	myb domain protein 92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]