PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00049744_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 105aa    MW: 12024.3 Da    PI: 8.9491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00049744_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000494261221
                                      EETTTTEEESSHHHHHHHHH CS
                           zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                                      +C+ Cg++F ++  L  H+r
  FANhyb_icon00049744_a.1.g00001.1 42 PCTECGRTFWSWKALFGHMR 61
                                      6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4734163IPR007087Zinc finger, C2H2
PfamPF139122.5E-84165IPR007087Zinc finger, C2H2
SuperFamilySSF576677.54E-64266No hitNo description
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
QQQRKKRSRL TRPEDADDDN PTNKRPKPAK KPDPSAPKIT TPCTECGRTF WSWKALFGHM  60
RCHPERHWRG IQPPPDFQRA GSSSSNPVHN PELELSMSED DHDAA
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459714.11e-70PREDICTED: zinc finger protein ZAT3-like
SwissprotO654998e-29ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A2P6PTB01e-45A0A2P6PTB0_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292305.15e-70(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-25C2H2-like zinc finger protein