PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00054010_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 84aa MW: 9902.5 Da PI: 9.9802

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00054010_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	48.8	1.3e-15	1	79	295	373
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +n+vaceg +r+ r et+++W+ r ++aGF+ +pl++++++++k +++ + + v+e+ ++++ gWk+r + FANhyb_icon00054010_a.1.g00001.1 1 MNIVACEGINRIVRPETYKQWQIRNTRAGFRLLPLDYEVVNKIKDKVKMEYHPNFVVNEDGHWMLHGWKGRMRLGSA 77 59***********************************************999***************887777 PP GRAS 372 aW 373 +W FANhyb_icon00054010_a.1.g00001.1 78 CW 79 77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.4E-13	1	79	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	12.427	1	60	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MNIVACEGIN RIVRPETYKQ WQIRNTRAGF RLLPLDYEVV NKIKDKVKME YHPNFVVNED 60 GHWMLHGWKG RMRLGSACWA PSTT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	4e-51	PREDICTED: scarecrow-like protein 14
Refseq	XP_011461309.1	5e-52	PREDICTED: scarecrow-like protein 14
Swissprot	Q3EDH0	2e-29	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A2P6QIX5	3e-43	A0A2P6QIX5_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	2e-50	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	9e-32	GRAS family protein