PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00059902_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 71aa    MW: 7887.82 Da    PI: 4.6899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00059902_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-053292354
                                      HHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                               HLH 23 LrellPkaskapskKlsKaeiLekAveYIksL 54
                                      Lr ++P+       +++Ka+ L  Av YI++L
  FANhyb_icon00059902_a.1.g00001.1  3 LRAVVPNV-----SRMDKASLLSDAVSYINEL 29
                                      78888884.....59***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.728129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-9245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
YALRAVVPNV SRMDKASLLS DAVSYINELK AKVDELESQL QRESKKVKVE MADNLDNQST  60
TTTASVEQTQ T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-171562583Transcription factor MYC2
5gnj_B5e-171562583Transcription factor MYC2
5gnj_E5e-171562583Transcription factor MYC2
5gnj_F5e-171562583Transcription factor MYC2
5gnj_G5e-171562583Transcription factor MYC2
5gnj_I5e-171562583Transcription factor MYC2
5gnj_M5e-171562583Transcription factor MYC2
5gnj_N5e-171562583Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306627.19e-40PREDICTED: transcription factor MYC2
SwissprotO230901e-15BH014_ARATH; Transcription factor bHLH14
TrEMBLA0A2P6SIR35e-36A0A2P6SIR3_ROSCH; Putative transcription factor bHLH family
STRINGXP_004306627.14e-39(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]