PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon17444144_o.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 70aa MW: 7817.9 Da PI: 7.6098

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon17444144_o.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.3	5.3e-14	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ e FANhyb_icon17444144_o.1.g00001.1 1 LVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGE 40 79*********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.92	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
LVYEANVRLR DPVYGCMGAI SALQQQVQSL QAELNAVRGE ILKFKYREAN LMDPSSHHHQ 60 VAALFSTTTT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307714.1	3e-44	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	3e-20	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P6SLM5	7e-35	A0A2P6SLM5_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004307714.1	1e-43	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-17	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]