PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon19146025_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 95aa MW: 10999.7 Da PI: 10.1889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon19146025_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.4	4.1e-34	1	90	40	128
NAM 40 ykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115 yk++Pw+Lp k+ +++ewyfF++rd+ky++g+r+nra+ gyWkatg+dk++ls+ +++ +g+kk Lvfy+g+ pk FANhyb_icon19146025_s.1.g00001.1 1 YKYNPWELPPKALFGKEEWYFFTPRDRKYPNGTRPNRAAGLGYWKATGTDKHILSScGTKSIGVKKALVFYTGHPPK 77 799***966667899**********************************988889************ PP NAM 116 gektdWvmheyrl 128 g+kt+W+m+eyrl FANhyb_icon19146025_s.1.g00001.1 78 GVKTEWIMNEYRL 90 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-36	1	93	IPR003441	NAC domain
PROSITE profile	PS51005	38.699	1	95	IPR003441	NAC domain
Pfam	PF02365	4.6E-15	10	90	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
YKYNPWELPP KALFGKEEWY FFTPRDRKYP NGTRPNRAAG LGYWKATGTD KHILSSCGTK 60 SIGVKKALVF YTGHPPKGVK TEWIMNEYRL LDTTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-42	1	92	58	147	NAC domain-containing protein 19
3swm_B	4e-42	1	92	58	147	NAC domain-containing protein 19
3swm_C	4e-42	1	92	58	147	NAC domain-containing protein 19
3swm_D	4e-42	1	92	58	147	NAC domain-containing protein 19
3swp_A	4e-42	1	92	58	147	NAC domain-containing protein 19
3swp_B	4e-42	1	92	58	147	NAC domain-containing protein 19
3swp_C	4e-42	1	92	58	147	NAC domain-containing protein 19
3swp_D	4e-42	1	92	58	147	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306241.1	5e-64	PREDICTED: NAC transcription factor 29-like
Swissprot	Q9LD44	1e-45	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2P6RAS5	7e-64	A0A2P6RAS5_ROSCH; Putative transcription factor NAM family
STRING	XP_004306241.1	2e-63	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	4e-48	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]