PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon19372417_s.1.g00001.1

Common Name

LFY-2

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LFY

Protein Properties

Length: 77aa MW: 8229.4 Da PI: 8.9757

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon19372417_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	47.2	4.4e-15	1	77	1	68
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap....leaaaaaaarklr......eleelfkayGvryltvaki 68 mdp+af+aslfkwd r +a++p+ rl eaa+++a ++aaaaaa +++r elee+f+ayGvry+t+a+i FANhyb_icon19372417_s.1.g00001.1 1 MDPNAFTASLFKWDLRGMAVPPN-RLPLEAAAAAAVapqqVAAAAAAAGYSVRapretgELEEMFRAYGVRYYTAARI 77 9***********998886655.44333333222212224445555556666888999***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	7.0E-16	1	77	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MDPNAFTASL FKWDLRGMAV PPNRLPLEAA AAAAVAPQQV AAAAAAAGYS VRAPRETGEL 60 EEMFRAYGVR YYTAARI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the specification of floral meristem identity.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300371.1	8e-31	PREDICTED: floricaula/leafy homolog
Swissprot	O22621	5e-18	ALF_PETHY; Protein ALF
TrEMBL	H6V2T7	1e-42	H6V2T7_FRAAN; LEAFY like protein 2
STRING	XP_004300371.1	3e-30	(Fragaria vesca)

Publications ? help Back to Top
Souer E, et al. Genetic control of branching pattern and floral identity during Petunia inflorescence development. Development, 1998. 125(4): p. 733-42 [PMID:9435293]