PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon19443061_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 77aa MW: 8716.12 Da PI: 4.449

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon19443061_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	37.2	4.2e-12	4	74	142	214
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214 l iT+vg k++++etgerLa++A++l++pfe++ +++++++d++ + ++ + +Ea++V l l ++ FANhyb_icon19443061_s.1.g00001.1 4 LTITAVGV---RGKQNIKETGERLASVAKSLNLPFEYKEVIVSDMQDIKDHLFDEIEdEEAVVVYAPLVLRTMI 74 67999999...589********************************999996554499**9999888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.048	1	77	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-9	4	74	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
VELLTITAVG VRGKQNIKET GERLASVAKS LNLPFEYKEV IVSDMQDIKD HLFDEIEDEE 60 AVVVYAPLVL RTMIMRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024172362.1	2e-37	DELLA protein RGL1-like
TrEMBL	A0A2P6PI40	6e-36	A0A2P6PI40_ROSCH; Putative transcription factor GRAS family
STRING	XP_004301794.1	9e-34	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	3e-07	GRAS family protein