PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon19849101_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 109aa MW: 11796.1 Da PI: 4.7918

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon19849101_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	49.3	1.9e-15	1	62	37	91
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaa 91 +eLG+++d++tieWLl+qa+p+i + tg+s ++++ + ++ +++s++++s +k++ FANhyb_icon19849101_s.1.g00001.1 1 RELGHKTDGQTIEWLLKQAEPSILAVTGNSVTPSNTSstlvsvnLQAGNVVSEDKNSLRKKC 62 79***************************999997774222222222222222233333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	14.497	1	26	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.3E-11	1	56	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
RELGHKTDGQ TIEWLLKQAE PSILAVTGNS VTPSNTSSTL VSVNLQAGNV VSEDKNSLRK 60 KCTKGGQPLP PPYDHYLKII TTNYSIEFSV NDVAIDVGIE AQGEDGRQD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459878.1	6e-69	PREDICTED: transcription factor TCP8-like
STRING	XP_009359974.1	1e-13	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-15	TCP family protein