PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon20016871_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 126aa MW: 13142.7 Da PI: 8.9708

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon20016871_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	3.9e-10	15	40	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ FANhyb_icon20016871_s.1.g00001.1 15 KTRLCNKYNTAEGCKFGDKCHFAHGE 40 8***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-14	11	44	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-9	12	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0013	13	40	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.244	13	41	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-7	15	40	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50084	11.175	83	126	IPR004088	K Homology domain, type 1
SuperFamily	SSF54791	8.06E-8	86	124	IPR004088	K Homology domain, type 1
CDD	cd00105	5.02E-8	87	125	No hit	No description
Gene3D	G3DSA:3.30.1370.10	4.4E-8	87	124	IPR004088	K Homology domain, type 1
Pfam	PF00013	3.0E-6	87	119	IPR004088	K Homology domain, type 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
APPSFPDGSS PPAVKTRLCN KYNTAEGCKF GDKCHFAHGE YELGRPTAQS YDDPRGGGAM 60 HGRMGGRNEP PPPSHGAGRF GAIANAKISV DASLAGAIIG KNGLNSKQIC RVTGAKLSIR 120 EHESDP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295154.1	2e-86	PREDICTED: zinc finger CCCH domain-containing protein 14
Swissprot	Q7XPK1	8e-39	C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBL	A0A2P6QMU4	1e-83	A0A2P6QMU4_ROSCH; Putative transcription factor C3H family
STRING	XP_004295154.1	6e-86	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1462	32	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	5e-22	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]