PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon20430553_s.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 150aa    MW: 16201.7 Da    PI: 10.3871
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon20430553_s.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.36.1e-16794186
                          trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75
                                      +W+++ + +Liea  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k  +  +    
  FANhyb_icon20430553_s.1.g00001.1  7 CWSESATAVLIEAWGERYLELSRGNLKQKHWKEVADIVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMLAG--AG 83
                                      7*************************************85444455566778*****************999997..45 PP

                          trihelix 76 sstcpyfdqle 86
                                       s++p+f +l+
  FANhyb_icon20430553_s.1.g00001.1 84 PSKWPFFAKLD 94
                                      568******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-26596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
GGGREDCWSE SATAVLIEAW GERYLELSRG NLKQKHWKEV ADIVSSREDY GKTPKTDIQC  60
KNRIDTVKKK YKLEKSKMLA GAGPSKWPFF AKLDHLIGAT GKGTPGSGGG PVPPGFMSKN  120
HKIPMGMPVG VRGGGGGVGQ FVPKHLQQLQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305769.11e-106PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG82e-60ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6QFA14e-65A0A2R6QFA1_ACTCH; Trihelix transcription factor
STRINGXP_004305769.11e-106(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-48sequence-specific DNA binding transcription factors