PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon20462153_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 129aa MW: 14512.2 Da PI: 4.8197

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon20462153_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.9	2.9e-16	55	125	14	89
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++ +pk+f eh ++ ++ +++l++++g+ Wev++ ++gr +++GW+ F+ a ++k +D ++F+l+g+++ FANhyb_icon20462153_s.1.g00001.1 55 HNVGIPKSFS-EHLSP--GQYEVSLKNSKGKPWEVRV--LENRGRLCISAGWRAFAVASQIKLRDKCTFELVGEKR 125 4589***9.66333..6689***********..*****************************998433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-15	41	129	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.026	42	129	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-16	43	129	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.0E-6	47	128	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-14	55	127	IPR003340	B3 DNA binding domain
CDD	cd10017	4.61E-14	59	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
VTHDHVTSMF YFGCEADNEV EVEDEEDYND NPAQESAELS ESGVPQFTSI ISLPHNVGIP 60 KSFSEHLSPG QYEVSLKNSK GKPWEVRVLE NRGRLCISAG WRAFAVASQI KLRDKCTFEL 120 VGEKRMVVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459755.1	1e-76	PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBL	A0A2P6PN00	1e-39	A0A2P6PN00_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004292461.1	1e-70	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14202	8	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31650.1	2e-12	B3 family protein