PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon20621202_s.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 209aa MW: 24161.4 Da PI: 10.5547

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon20621202_s.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	23	109	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkw 76 Y+++A+ G+ v+ ++++k+k+ + + ++C k gk++++kkk +k+r+++ + +t+C ++ +++ w FANhyb_icon20621202_s.1.g00001.1 23 YQSHAYGNGYGVVLNAKNKNKEGQ---RIIYMCDKGGKAQDRKKKdlhPSKKRKNTGSRKTNCPFRIIAQEK-AVGW 95 9*************99997777...777*********9999889999999*******988888.899 PP FAR1 77 evtkleleHnHela 90 + + le++HnHel+ FANhyb_icon20621202_s.1.g00001.1 96 RGYILEEHHNHELS 109 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-10	23	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
RIKIGDPLPD AEYESLERLL AAYQSHAYGN GYGVVLNAKN KNKEGQRIIY MCDKGGKAQD 60 RKKKDLHPSK KRKNTGSRKT NCPFRIIAQE KAVGWRGYIL EEHHNHELSD DPIAHSSNRT 120 KRLDINQEAK VLVSKILNRR ARVSTIRSQV RDKLGVELNA RDVYNFGQKI RSQELGGKTP 180 INWLADKLEE RNFFHRINTD ENNRVTRLF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13554	2	4