PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000003.1.g00026.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 236aa MW: 26450.6 Da PI: 4.882

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000003.1.g00026.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	7.9e-38	7	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ FANhyb_rscf00000003.1.g00026.1 7 SCGACKFLRRKCTSECVFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEALARMRDPIYGCVS 85 6**********************9789********************************************** PP DUF260 79 vilklqqqleqlkaelall 97 i++lqqq++ l++e+++l FANhyb_rscf00000003.1.g00026.1 86 QIFALQQQVAYLQEEIETL 104 *************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.828	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-36	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQH 60 RSDAALTMSY EALARMRDPI YGCVSQIFAL QQQVAYLQEE IETLLQNQMV SLVSANSSAC 120 GSSEGNSNSN TFSGLQVFPA QQYDIAVDRQ KFQNQPEPPI LLPQVGVAST NQGFSSHDHQ 180 MDIQMPTLYE WEEVKTFGDR STQDSLEKFL EDIDQENLGH NPWLNDPSIA WNWKRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-33	3	103	7	106	LOB family transfactor Ramosa2.1
5ly0_B	1e-33	3	103	7	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308845.1	1e-179	PREDICTED: LOB domain-containing protein 29
TrEMBL	M5X8P1	1e-100	M5X8P1_PRUPE; Uncharacterized protein
STRING	XP_004308845.1	1e-178	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-54	LOB domain-containing protein 33