PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000003.1.g00051.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 218aa    MW: 25181.1 Da    PI: 8.5792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000003.1.g00051.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-182731998
                                    -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                    p+ f+++++g+       +l+ ++g+sW+vkl  + k +++++ kGWk+F k+n L+egDf+vF +dg+s+f   v++++
  FANhyb_rscf00000003.1.g00051.1  2 PRAFVTHFNGP----ALCKLQGPTGKSWDVKL--EEKNNEIFFHKGWKKFLKDNFLDEGDFLVFNYDGDSCF--SVTIYD 73
                                    88999766665....3579*************..**************************************..888876 PP
2B342.98.5e-141232041299
                                     HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                     k+ +l++p k +++  +++   ++ l l+d+++ sW v++  +  +++  ++t+GW + +kan+++eg ++vF++++  
  FANhyb_rscf00000003.1.g00051.1 123 KLYQLTIPIKIVRAKlQMS---KQILELRDPKNMSWPVTV--TPMPDGrLLMTTGWCDCCKANQIEEGHTIVFEFVK-- 194
                                     55679******98886444...347***************..55555559************************876.. PP

                                     EE..EEEEE-S CS
                              B3  89 efelvvkvfrk 99 
                                      ++ ++++fr+
  FANhyb_rscf00000003.1.g00051.1 195 -GHVKLHIFRA 204
                                     .5557788875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.524175IPR003340B3 DNA binding domain
CDDcd100173.64E-16173No hitNo description
SuperFamilySSF1019367.46E-19180IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-16273IPR003340B3 DNA binding domain
SMARTSM010196.0E-6275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-19376IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-17108207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-17108207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.701112205IPR003340B3 DNA binding domain
CDDcd100172.09E-10113203No hitNo description
SMARTSM010191.5E-10115205IPR003340B3 DNA binding domain
PfamPF023624.2E-12123204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MPRAFVTHFN GPALCKLQGP TGKSWDVKLE EKNNEIFFHK GWKKFLKDNF LDEGDFLVFN  60
YDGDSCFSVT IYDESSCEMD MEVAKTKRSG GGRRRDHIWP GESRIIEFNS KHFCFKRTFT  120
KHKLYQLTIP IKIVRAKLQM SKQILELRDP KNMSWPVTVT PMPDGRLLMT TGWCDCCKAN  180
QIEEGHTIVF EFVKGHVKLH IFRAEGCNVI LTGPNVVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305410.11e-127PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466851.11e-127PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466852.11e-127PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466853.11e-127PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466854.11e-127PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466855.11e-127PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A2P6S8F21e-115A0A2P6S8F2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308903.11e-159(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-17B3 family protein