PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000004.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 140aa MW: 15898.7 Da PI: 5.8333

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000004.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	59	111	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq + Lee F+++++++ +++e LA +l+L rqV vWFqNrRa FANhyb_rscf00000004.1.g00006.1 59 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALAFQLKLRPRQVEVWFQNRRAS 111 78889**********************************************95 PP
2	HD-ZIP_I/II	79.3	6.1e-26	59	124	1	65
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk.tkqlEkdyea 65 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRA +k+l ++ ea FANhyb_rscf00000004.1.g00006.1 59 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALAFQLKLRPRQVEVWFQNRRASCNaSKNLQEQAEA 124 69**************************************************87625666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-18	40	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.91E-18	48	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.613	55	115	IPR001356	Homeobox domain
SMART	SM00389	8.4E-14	57	119	IPR001356	Homeobox domain
CDD	cd00086	7.59E-14	58	112	No hit	No description
Pfam	PF00046	1.6E-15	59	111	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MASLELTMSV PGFSSYPSIP SSVRDLDINQ IPSAGQGADQ EELLEDEEDS SNGSGGRPRK 60 KLRLTKEQSR LLEESFRQHH TLNPRQKEAL AFQLKLRPRQ VEVWFQNRRA SCNASKNLQE 120 QAEANRDGMR VSEEMVRVTD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	62	RPRKKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297367.1	6e-63	PREDICTED: homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1	2e-33	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q8S9N6	3e-33	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
Swissprot	Q9XH38	2e-33	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2P6R395	5e-55	A0A2P6R395_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004297367.1	2e-62	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9506	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-33	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]