PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000004.1.g00026.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 158aa MW: 17807.2 Da PI: 5.1996

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000004.1.g00026.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	124.9	1.1e-38	11	145	6	134
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaae..shldeslkeelleelkv 77 +eq+CyvqC+fC t+l+vsvP +sl+++vtvrCGhC+ llsvn+ kas +lla+ +++d++ e+ e+ FANhyb_rscf00000004.1.g00026.1 11 PAEQICYVQCGFCATLLLVSVPCSSLSRLVTVRCGHCSCLLSVNMIKASflpfhHLLASLgqDDVDQEKDREICVEEIE 89 579***************************************99887566655555541133344444444333333 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 + + +++++s s++ + +e+ ++ + + v++PPekrqr+Psaynrfi FANhyb_rscf00000004.1.g00026.1 90 KVKYPGLGDMRSQSMVVSNNY-ENEEDYTNTFSLNHIVNKPPEKRQRAPSAYNRFIN 145 333333333443333333333.226666777777777****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-36	11	145	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSTLNHLFDL PAEQICYVQC GFCATLLLVS VPCSSLSRLV TVRCGHCSCL LSVNMIKASF 60 LPFHHLLASL GQDDVDQEKD REICVEEIEK VKYPGLGDMR SQSMVVSNNY ENEEDYTNTF 120 SLNHIVNKPP EKRQRAPSAY NRFINSGDLE HELASVDH

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298482.1	1e-103	PREDICTED: axial regulator YABBY 4 isoform X2
Swissprot	Q9LDT3	7e-39	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2P6R3H2	9e-71	A0A2P6R3H2_ROSCH; Putative transcription factor C2C2-YABBY family
STRING	XP_004298482.1	1e-102	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-29	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]