PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000007.1.g00013.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 228aa MW: 25302.8 Da PI: 10.0492

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000007.1.g00013.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	16	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky FANhyb_rscf00000007.1.g00013.1 16 RVPWTEEEHKLFLLGLRKVGKGDWRGISRNYVKTRTPTQVASHAQKY 62 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.088	11	67	IPR017930	Myb domain
SuperFamily	SSF46689	9.66E-17	14	67	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-10	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-12	16	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-10	16	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-17	16	65	IPR006447	Myb domain, plants
CDD	cd00167	3.05E-10	18	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MCLRYVVKLP FPWTDRVPWT EEEHKLFLLG LRKVGKGDWR GISRNYVKTR TPTQVASHAQ 60 KYFLRRSNHN RRRRRSSLFD ITTDSVPAIA MEEEQVQYQD NTSHSQQLPP PPPQTESCNP 120 NGFSMMANFP MNVGPAVVQV PTMNPTGNLP LGQGNPGGPS SKLVCPVVHS APHPTRSCDL 180 NLNATADTSP LALNLSLSMN SMESSSRRLP FQAMSSFSKG DTNIISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299599.2	1e-117	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB1R1
Swissprot	Q2V9B0	1e-39	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2P6P2B6	1e-101	A0A2P6P2B6_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004299599.1	1e-131	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	7e-33	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]