PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000010.1.g00028.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 348aa    MW: 40366.2 Da    PI: 10.5384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000010.1.g00028.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182168148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
  FANhyb_rscf00000010.1.g00028.1 21 RGPWTLEEDTLLIQYIARHGEGRWNLLANRAGLRRTGKSCRLRWLNYL 68
                                    89********************************************97 PP
2Myb_DNA-binding52.51.2e-1674117146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg+ T+eE++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
  FANhyb_rscf00000010.1.g00028.1  74 RGNLTPEEQLMILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7011672IPR017930Myb domain
SuperFamilySSF466892.47E-3119115IPR009057Homeodomain-like
SMARTSM007173.8E-162070IPR001005SANT/Myb domain
PfamPF002498.8E-182168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-232275IPR009057Homeodomain-like
CDDcd001671.83E-112368No hitNo description
PROSITE patternPS0017503645IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007175.3E-1573121IPR001005SANT/Myb domain
PROSITE profilePS5129420.61573123IPR017930Myb domain
PfamPF002493.2E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2376122IPR009057Homeodomain-like
CDDcd001679.41E-1178117No hitNo description
PfamPF012518.5E-78164344IPR000554Ribosomal protein S7e
PROSITE patternPS009480236249IPR000554Ribosomal protein S7e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005618Cellular Componentcell wall
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSTNTKSFSS SSSEDDNELR RGPWTLEEDT LLIQYIARHG EGRWNLLANR AGLRRTGKSC  60
RLRWLNYLKP DVKRGNLTPE EQLMILDLHS KWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQARHLKIDT NSTDVPKPKV EAFTHSERQI SLSGFFNMFT ARKKIHKDKD AEPSEFEESV  180
AQAFFDLENT NQELKSDLKD LYINSAALVD VAGNRKAVVI HVPFRLRKAY RKIHVRLVRE  240
LEKKFSGKDV ILIATRRIVR PPKKGSAAQR PRTRTLTAVH EAVLEDVVLP AEIVGKRIRY  300
RLDGSKIMKV FLDPKERNNT EYKLESFSAV YRKLSGKDVV FEYPITEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BH1e-113161347118740S ribosomal protein S7E
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300515.11e-134PREDICTED: 40S ribosomal protein S7-1
SwissprotQ9C5141e-114RS71_ARATH; 40S ribosomal protein S7-1
TrEMBLA0A2P6P3S11e-129A0A2P6P3S1_ROSCH; 40S ribosomal protein S7
STRINGXP_004300515.11e-134(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-69myb domain protein 62
Publications ? help Back to Top
  1. Barakat A, et al.
    The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.
    Plant Physiol., 2001. 127(2): p. 398-415
    [PMID:11598216]
  2. Giavalisco P, et al.
    High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
    Plant Mol. Biol., 2005. 57(4): p. 577-91
    [PMID:15821981]
  3. Bayer EM, et al.
    Arabidopsis cell wall proteome defined using multidimensional protein identification technology.
    Proteomics, 2006. 6(1): p. 301-11
    [PMID:16287169]
  4. Carroll AJ,Heazlewood JL,Ito J,Millar AH
    Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.
    Mol. Cell Proteomics, 2008. 7(2): p. 347-69
    [PMID:17934214]
  5. Turkina MV,Klang Årstrand H,Vener AV
    Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night.
    PLoS ONE, 2011. 6(12): p. e29307
    [PMID:22195043]