PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000013.1.g00009.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 288aa MW: 32230.9 Da PI: 8.8582

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000013.1.g00009.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.4e-10	115	161	5	32
HHHHHHHHHHHHHHHHHHHHCTSCCC..................... CS HLH 5 hnerErrRRdriNsafeeLrellPkas...................k 32 hn+ Er+RRdriN+++ L++l+P+a k FANhyb_rscf00000013.1.g00009.1 115 HNQSERKRRDRINQKMKALQRLVPNANkllatilqtdkasmldeecK 161 9************************8757555554444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-11	107	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.021	110	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-10	114	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.60E-9	115	158	No hit	No description
Pfam	PF00010	8.9E-8	115	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-6	116	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAASSGGTWT DDSGQQPLAN GWIRKRTRSD SDYHGKNVSS TSTTSNVHEE QTEYQMDNDT 60 TLNTWTSFES AKTKSNDDDS TCHEGLENQD VERETTKGHE SSRSRSRPRR VAAIHNQSER 120 KRRDRINQKM KALQRLVPNA NKLLATILQT DKASMLDEEC KQQQQQQHQM SILARMGMTP 180 VVPGALGMGM GMLNVSNMAR MAPHQSLQQQ LIHPTPASFL PPFMVPQLMP PKPDPATNAN 240 SDSFANPYCT FLAQQQSMNM DLFNRMAAVF RQQVNHQSAA SSPSQSKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	ERKRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301128.2	1e-164	PREDICTED: transcription factor PIF7 isoform X1
TrEMBL	A0A2P6P2V1	1e-129	A0A2P6P2V1_ROSCH; Putative transcription factor bHLH family
STRING	XP_004301128.1	1e-165	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12999	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-19	bHLH family protein