PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000013.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 385aa    MW: 43917.4 Da    PI: 6.5746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000013.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.2e-141599799
                                    .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                              B3  7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                                    p + ++++ l +p +f++++ g+++++    +l+ +  r+W v +  +   +++++++GW+ F ++ngLk g  +vF++ g
  FANhyb_rscf00000013.1.g00016.1 15 PGHQFTNK-LKIPTEFLQHFhGNVPHQ---CQLQ-TAARTWLVHV--EVVNNKFYFQEGWNAFLQQNGLKYGQLLVFHYAG 88
                                    55566665.********7776555544...5655.588*******..777777**************************** PP

                                    SSEE..EEEEE-S CS
                              B3 87 rsefelvvkvfrk 99
                                    +s f  +v +f k
  FANhyb_rscf00000013.1.g00016.1 89 NSHF--HVDIFGK 99
                                    9999..**99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-195102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-206102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-11897No hitNo description
PROSITE profilePS5086311.8578100IPR003340B3 DNA binding domain
SMARTSM010191.2E-910100IPR003340B3 DNA binding domain
PfamPF023626.1E-121299IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.102.4E-4231317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MATRVKLPSF LKIVPGHQFT NKLKIPTEFL QHFHGNVPHQ CQLQTAARTW LVHVEVVNNK  60
FYFQEGWNAF LQQNGLKYGQ LLVFHYAGNS HFHVDIFGKN TCGELFVMAE TEEADEEDYD  120
VSLEITDGSP VSSPLPRKNE KRGGTSSSQR FLEKDLWGAR IRAEEFKLKN PSAFLVSMKP  180
SYIKYKFVVR PCKLWLPAEF TMLVKPRIEN SGDVILRVSD CRVRTWRAKL TCDNVATNRC  240
KLHDISDNED HENDEEGDDE SEDEEETEDE EEGDDASSEA LNYVPPGSRT IASRLHKRRK  300
NWTSSIVKAP RLSRDEKILN AIALKKANAF QSESTHHSFV VSLCASYAVE IFRMTDAVCT  360
SSQGKGKQLR TESINSRIKT EIQID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299322.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_011464332.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P6RMX01e-124A0A2P6RMX0_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004299322.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2615523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-12B3 family protein