PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000019.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 148aa    MW: 17249.6 Da    PI: 8.4492
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000019.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.4e-31959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krienk+nrqvtf+kRrng+lKKA ELSvLCdaeva+iifss+gklye++s
  FANhyb_rscf00000019.1.g00011.1  9 KRIENKINRQVTFAKRRNGLLKKACELSVLCDAEVALIIFSSRGKLYEFCS 59
                                    79***********************************************96 PP
2K-box62.61.6e-2182144971
                           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                     + +++++s ++e+++Lk+++e Lqr+qR+l Ge+Le L+ +eLqqLe++L+ slk++Rs++  
  FANhyb_rscf00000019.1.g00011.1  82 QPAQDTQSRYEEYENLKAKVEVLQRTQRRLDGENLEHLDTEELQQLENELDLSLKRVRSRQVS 144
                                     567899******************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.478161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002656.45E-44278No hitNo description
SuperFamilySSF554552.35E-34282IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-1785142IPR002487Transcription factor, K-box
PROSITE profilePS5129710.91887148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KACELSVLCD AEVALIIFSS RGKLYEFCSG  60
PSMEKTLEKY QRYTYAELEA GQPAQDTQSR YEEYENLKAK VEVLQRTQRR LDGENLEHLD  120
TEELQQLENE LDLSLKRVRS RQVSTFVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21174173MEF2 CHIMERA
6byy_B1e-21174173MEF2 CHIMERA
6byy_C1e-21174173MEF2 CHIMERA
6byy_D1e-21174173MEF2 CHIMERA
6bz1_A1e-21174173MEF2 CHIMERA
6bz1_B1e-21174173MEF2 CHIMERA
6bz1_C1e-21174173MEF2 CHIMERA
6bz1_D1e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462991.11e-96PREDICTED: MADS-box protein CMB1-like isoform X2
SwissprotQ7Y0403e-66EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A2P6R2E93e-86A0A2P6R2E9_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004298354.11e-95(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]