PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000021.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 510aa MW: 53382.5 Da PI: 8.6417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000021.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H FANhyb_rscf00000021.1.g00008.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ FANhyb_rscf00000021.1.g00008.1 132 WKCERCSKKYAVQSDWKAHMKTC 154 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.64E-7	55	78	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.2E-5	56	78	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	56	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	97	127	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-5	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.64E-7	127	153	No hit	No description
SMART	SM00355	77	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MDDLDNSSSL VGSTASGEAS FSEPPAKKKR NLPGMPDPDA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP ETSCVHHNPA RALGDLTGIK 120 KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFARR DSFITHRAFC 180 DALAEESAKA QTLGSSQLGT PNPNPNAGKA VVVASPPPPP LTPSNNVVSP ALSIQSSEFP 240 AENPVRVSPP PPATTCLTSA TTAIGITATA TTTSTGNCSN TSTSVFASIF APSSNGSQTS 300 AAANSSYSSA IPSVSAMEPT SLSLSTSVYL SNNGSSLFPT TNHQDQRQYV ASPQAPAMSA 360 TALLQKAAQM GAATTSGSFL CGFGLDTSSS PPQAQDSTAS LQWSNNSHSQ QHKRDGSGGA 420 AATVAAGLTD LMMGPPLPFG SHHQPMTRDL LGLGIGDNGG GGNASSAGLS ALLNSFGGGG 480 GYATYARGEE SSWEGAQERK PNTSNGPALL

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MDDLDNSSSL VGSTASGEAS FSEPPAKKKR NLPGMPDPDA EVIALSPKTL MATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP ETSCVHHNPA RALGDLTGIK  120
KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFARR DSFITHRAFC  180
DALAEESAKA QTLGSSQLGT PNPNPNAGKA VVVASPPPPP LTPSNNVVSP ALSIQSSEFP  240
AENPVRVSPP PPATTCLTSA TTAIGITATA TTTSTGNCSN TSTSVFASIF APSSNGSQTS  300
AAANSSYSSA IPSVSAMEPT SLSLSTSVYL SNNGSSLFPT TNHQDQRQYV ASPQAPAMSA  360
TALLQKAAQM GAATTSGSFL CGFGLDTSSS PPQAQDSTAS LQWSNNSHSQ QHKRDGSGGA  420
AATVAAGLTD LMMGPPLPFG SHHQPMTRDL LGLGIGDNGG GGNASSAGLS ALLNSFGGGG  480
GYATYARGEE SSWEGAQERK PNTSNGPALL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-36	128	193	3	68	Zinc finger protein JACKDAW
5b3h_F	8e-36	128	193	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291889.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-140	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2P6PYJ3	0.0	A0A2P6PYJ3_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004291889.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-125	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]