PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000023.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22943.9 Da    PI: 4.9661
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000023.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-16957149
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                    k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ g++y +
  FANhyb_rscf00000023.1.g00007.1  9 KKIQNKAYLKATFSKRRKGLFGKARELCDMCGAEIAILTVSPGGRFYNF 57
                                    6899*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.862161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-22171IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRRKIEIKK IQNKAYLKAT FSKRRKGLFG KARELCDMCG AEIAILTVSP GGRFYNFGRP  60
NVESVIARYC GDETSITVDE NHDDCVISHE DDDEDLEGEQ EREVEVSTGE VEEELINKHI  120
KEMNLIEHIN RERDGRMRKS LLLQKFWWDE EKPVDPEQLE MYYYHSLTQL RNNVVSVLND  180
RKMRELYATD YLSMM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308233.11e-115PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6Q8667e-74A0A2P6Q866_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004308233.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2214924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-24M-type_MADS family protein