PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000023.1.g00024.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YC

Protein Properties

Length: 258aa MW: 28619.4 Da PI: 7.8276

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000023.1.g00024.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	139.3	1e-43	89	173	18	102
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 + rikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ FANhyb_rscf00000023.1.g00024.1 89 SSNNSSFRIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 167 5555557********************************************************************** PP NF-YC 97 prdelk 102 prdelk FANhyb_rscf00000023.1.g00024.1 168 PRDELK 173 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.17E-25	85	173	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.6E-34	96	169	IPR009072	Histone-fold
Pfam	PF00808	1.2E-17	96	154	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDHSEQTQQQ LQQQQQQHHH QQQPPVVGVV AGSGQMSYAP PSYQTAPMVA SGTPAVAIPS 60 PTSRPRLSLI PHIRLPTSKH ITSTTNSSSS NNSSFRIKKI MKADEDVRMI SAEAPVIFAK 120 ACEIFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD ELKEEGLGVT 180 KANIPVVGSA ADLPYYYVPP QHPVGAPGMI MGKPVDQATM YGAQQPRPPM AFMPWTQSQP 240 QQPLPQQQQQ TQQQQTDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-45	79	169	5	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306566.1	1e-122	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_004306567.1	1e-122	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_011468848.1	1e-122	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-60	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A2P6Q892	1e-119	A0A2P6Q892_ROSCH; Putative transcription factor Hap3/NF-YB family
STRING	XP_004306566.1	1e-121	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12372	28	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-61	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]