PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000026.1.g00033.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 541aa    MW: 62278.7 Da    PI: 6.7363
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000026.1.g00033.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.5e-15123181265
                        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                     W+++e laL+++r+ me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+
  FANhyb_rscf00000026.1.g00033.1 123 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNNIN 181
                                     ********************998.....9*******************************9887 PP
2trihelix92.15.8e-29404493186
                        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                                     rW+++evlaLi++r +  ++  ++       k+plWe++s+ m+e g++r++k+Ckekwen+nk+++k+k+ +kkr s 
  FANhyb_rscf00000026.1.g00033.1 404 RWPRDEVLALINLRCSFFNNADQQDkdkdvIKAPLWERISQGMSEMGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SL 481
                                     8*************977766665332344499*******************************************8.99 PP

                        trihelix  75 ssstcpyfdqle 86 
                                     +s+tcpyf+ql 
  FANhyb_rscf00000026.1.g00033.1 482 DSRTCPYFHQLS 493
                                     99********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.748115174IPR017877Myb-like domain
SMARTSM007178.9119176IPR001005SANT/Myb domain
PfamPF138372.3E-10121183No hitNo description
SMARTSM007171.1318468IPR001005SANT/Myb domain
PROSITE profilePS500906.47397466IPR017877Myb-like domain
CDDcd122035.25E-22403473No hitNo description
PfamPF138373.5E-18403493No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MFDEVDPAEQ LHQFIAASRT SLPLPLPNIP LSSFPNLQPF DHHHQHHHHN YNIINPPPPP  60
PPPQELVQLQ PPPHNQLLHP SVVLHRRGND QEKQESSTTL VLPSSNMEIE RQQAAPELPS  120
DPWSNDELLA LLRIRSTMEN WFPEFTWEHV SRKLAEAGFK RSAEKCKEKF EEESRYFNNI  180
NFNKNFRFLS ELEQLYQPPP VEPPQNPAED QPEKNVTQKE LAVEVEKPSE ELGDHQDKSH  240
QPASDAQESP SNDQTVSEKG MEVVRAKSNN KKRKRQRRFE MLKGFCEDIV NKLMAQQEEI  300
HSKLLEDMVR RDEEKLAKEE AWKKQEMDRM NKELRNHGTR TSCCSTPTSL TEAIAPQSPS  360
SSNLSNINPK LPAVSSPPPE NPSSDHLKTQ NPSSNDKPQD LGKRWPRDEV LALINLRCSF  420
FNNADQQDKD KDVIKAPLWE RISQGMSEMG YKRNAKRCKE KWENINKYFR KTKDVNKKRS  480
LDSRTCPYFH QLSTLYNQGI LVPPSDHQAP PPGKRSPEKQ SSSLAEGEKN NVVPAAFDFE  540
F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276KRKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302032.10.0PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1812e-86GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A2H4NFW60.0A0A2H4NFW6_FRAAN; Trihelix transcription factor GT-2C
STRINGXP_004302032.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-54Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]