PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000029.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 590aa MW: 63223.5 Da PI: 8.5525

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000029.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H FANhyb_rscf00000029.1.g00002.1 90 FICEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	11.9	0.00071	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ FANhyb_rscf00000029.1.g00002.1 166 WKCDKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.93E-7	89	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	89	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.022	90	112	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-5	90	112	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	90	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	131	161	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.5E-4	154	187	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.93E-7	161	186	No hit	No description
SMART	SM00355	150	166	186	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPQANSQGV 60 KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTSKEVKKKV YVCPESSCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINPTPL QTLSSPPPPS 240 HQPQINLMGG GGGPHLNFNP HGHDLHAYSA FMKKEHNNDH DQQIGSFSST SSLLPPWLAS 300 GPPPSATSIF SGNQDHHHDF QQNLELGPNP NPSLGPTLPQ FQVPAAAAAL SSPPHMSATA 360 LLQKAAQMGA TMSSSTTTSG SLSVPAGIMT RSHQGGHVSD FGGHVSSTTN GGAGGVGGGS 420 VHQQQQQHQQ QAASSLLHDM MNSLSSGTGF EGTSFEDAFG GMLGISKIKD GSRSGEADEN 480 GGQGGGEGLT RDFLGLKAMS HSDMMLNIAG LGSCVSNNNS SSTRDSSQIN QVPQKPNWQG 540 QDGCVLAAAA AQVHIGKTKV RFCLIPNLGA LLVGFNPEEA RSAYVLFCIS

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPQANSQGV  60
KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSKEVKKKV YVCPESSCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINPTPL QTLSSPPPPS  240
HQPQINLMGG GGGPHLNFNP HGHDLHAYSA FMKKEHNNDH DQQIGSFSST SSLLPPWLAS  300
GPPPSATSIF SGNQDHHHDF QQNLELGPNP NPSLGPTLPQ FQVPAAAAAL SSPPHMSATA  360
LLQKAAQMGA TMSSSTTTSG SLSVPAGIMT RSHQGGHVSD FGGHVSSTTN GGAGGVGGGS  420
VHQQQQQHQQ QAASSLLHDM MNSLSSGTGF EGTSFEDAFG GMLGISKIKD GSRSGEADEN  480
GGQGGGEGLT RDFLGLKAMS HSDMMLNIAG LGSCVSNNNS SSTRDSSQIN QVPQKPNWQG  540
QDGCVLAAAA AQVHIGKTKV RFCLIPNLGA LLVGFNPEEA RSAYVLFCIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	162	223	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-35	162	223	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297563.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-134	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2P6RY51	0.0	A0A2P6RY51_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004297563.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]