PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000031.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 566aa    MW: 63557.6 Da    PI: 9.7971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000031.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1821107599
                                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                     +  s  l+s+rl +p +f+ +++g +  s  ++l  +sg++W+v l    + g  ++  GW  Fv+++ L+ gDf++F+
  FANhyb_rscf00000031.1.g00004.1  21 F--SADLSSDRLKIPERFMIHMEGRT--SGVVVLSGPSGNVWNVHL--IEQNGDLFFHYGWPAFVRDHSLECGDFLIFR 93 
                                     4..778999**********9998884..44899999**********..88888899*********************** PP

                                     E-SSSEE..EEEEE-S CS
                              B3  84 ldgrsefelvvkvfrk 99 
                                     +dg+  f  +v+vf++
  FANhyb_rscf00000031.1.g00004.1  94 YDGELHF--TVQVFDQ 107
                                     *996666..9999987 PP
2B348.61.5e-152132961094
                                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                      + s  l +p kf  +h   ++++++++l +++g+sW+v+    ++   +++l +GW  Fv+ n++k gD++vF+l+++
  FANhyb_rscf00000031.1.g00004.1 213 ISGSYTLNIPYKFSVAHL--PNCKVKIVLLNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRYNDIKLGDICVFELVRE 289
                                     55566799*****99996..45999***************954566666799*************************99 PP

                                     SEE..EE CS
                              B3  88 sefelvv 94 
                                      ef+ ++
  FANhyb_rscf00000031.1.g00004.1 290 CEFRVHI 296
                                     9996655 PP
3B348.22e-154705481697
                                     EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                              B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                     + +p +f +eh     + +++++l++++g+sW+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g  ++e+
  FANhyb_rscf00000031.1.g00004.1 470 FKIPYQFSTEHlP---NIKTEIVLRNSKGESWTVNSVPDSKGRVvHTFCGGWVAFVRGNNINIGDICIFELVG--KREM 543
                                     679********43...35568***************5544444379999*********************998..5556 PP

                                     EEEEE CS
                              B3  93 vvkvf 97 
                                     +v++ 
  FANhyb_rscf00000031.1.g00004.1 544 RVHIS 548
                                     77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-2310110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2311110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-2015106No hitNo description
PROSITE profilePS5086314.49415108IPR003340B3 DNA binding domain
SMARTSM010191.2E-1317108IPR003340B3 DNA binding domain
PfamPF023624.4E-1619107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-23195297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-23197296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-19202296No hitNo description
PROSITE profilePS5086313.183204300IPR003340B3 DNA binding domain
SMARTSM010193.3E-11204300IPR003340B3 DNA binding domain
PfamPF023621.4E-12207296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-11396470IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-12397470IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.063404470IPR003340B3 DNA binding domain
SMARTSM010193.6E-9404551IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-19470550IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-13470547IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19471551IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984472551IPR003340B3 DNA binding domain
CDDcd100176.85E-14472547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MADEALRVMP NPRRPHFFAF FSADLSSDRL KIPERFMIHM EGRTSGVVVL SGPSGNVWNV  60
HLIEQNGDLF FHYGWPAFVR DHSLECGDFL IFRYDGELHF TVQVFDQTAC EKEAAFHTRC  120
GQSSSYFEKL VGRKRAREEG CGLDRLFEDS TSSQHTKPYE NPGLDVVIFK AKQAIQNSLN  180
DRNSMQITPA HEVAQSFSSS NPYFLRIMKN FNISGSYTLN IPYKFSVAHL PNCKVKIVLL  240
NLKGESWTVN SVPTTRVHTS HTLCGGWMAF VRYNDIKLGD ICVFELVREC EFRVHIQTGE  300
ASSRLCAPIT LKGLSKKAKG NSPKVHTKSL RKIEMAETRK HGNTSKSIAK GALSSQSKGA  360
SKKLATRRKK SVEDDLGSKA ELKMRLSLVE EKAAQSFTSC FPSFVKIMKK FNISGSYTLK  420
IPYQFSTEHL PNFKTEIVLR NSKGESWTVN SVPDSKGRVV HTFCGGWVAF KIPYQFSTEH  480
LPNIKTEIVL RNSKGESWTV NSVPDSKGRV VHTFCGGWVA FVRGNNINIG DICIFELVGK  540
REMRVHISGA DKNGFDHQAG ETTNAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291931.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A2P6PYE80.0A0A2P6PYE8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004291931.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein