PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000031.1.g00020.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 284aa    MW: 30795 Da    PI: 7.7824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000031.1.g00020.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023107129123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C++C + F ++  L  H++ H
  FANhyb_rscf00000031.1.g00020.1 107 FSCNYCQRKFYSSQALGGHQNAH 129
                                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6104134No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPTKNVVSV AEVPPSPNTP QQDPNESKKK LVILDDQDGE EVEEVNRPNT VLLLDLELSS  60
TSKDSTSNNS GFNPELNLID SLQMGGSSSE TDQSSPGDQG AAEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RQLMASAAAA AGLGGYPYFH HHQNHPYFLS MASLPLHGAY  180
NNKSLDIQVH SMIHKPSGSG SGIGFGSSYG SRGHRSSRPL FDQQPAIGKL APQNFQTTTS  240
SRGSGTTSNA GRFDMANVAW LESGSRFRSG QQEEMKKLDL SLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291947.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A2P6PYA11e-157A0A2P6PYA1_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004291947.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-40zinc-finger protein 1